PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 274aa    MW: 30774.5 Da    PI: 8.3017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754770genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0594116123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F+++  L  H++ H
  676754770  94 FECHYCFRNFPTSQALGGHQNAH 116
                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.09E-690121No hitNo description
PfamPF139122.2E-593118IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9994121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0010091Biological Processtrichome branching
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDETNGERET QDFMNVESFS QLPFFRRPPS KDKNRKPIRL FGKDFNGGDY FGSSGQEDYS  60
YSSETKKKED EEVEEDDQTG DNCKDNSISN NRRFECHYCF RNFPTSQALG GHQNAHKRER  120
QLAKRGASSY FHHPDANLYG YRNYPSWSSG SSPAARFYGG RTPDPSSSYH TRPINGSPLG  180
LWRVPPSSSS VRGVYNSNAA FTSHGSSNNS TLPFLAGSQP HPPLQVGSSA AQNRMSSYRY  240
DLIPNVQDHL LCGFEVSAMN TIVFGKIQRN GQSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116503.11e-143PREDICTED: zinc finger protein GIS
RefseqXP_013659894.11e-143PREDICTED: zinc finger protein GIS-like
RefseqXP_013659936.11e-143PREDICTED: zinc finger protein GIS-like
SwissprotQ84WI01e-106GIS_ARATH; Zinc finger protein GIS
TrEMBLA0A078EZN81e-143A0A078EZN8_BRANA; BnaA09g37260D protein
TrEMBLM4CT361e-143M4CT36_BRARP; Uncharacterized protein
STRINGBra007378.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.13e-95C2H2 family protein